PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012977-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 372aa    MW: 41158.2 Da    PI: 4.8083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012977-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.9e-121062248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     + W t+E++ll++av+++G+++W+++a +++        +t+ +ck ++++++
    NNU_012977-RA 10 DTWGTWEELLLACAVNRHGTNRWDSVAMEIQtrsstlHPLTAQNCKQKYHDLK 62
                     68*****************************9999995589999999999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.173466IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-5564IPR009057Homeodomain-like
SuperFamilySSF466892.94E-7670IPR009057Homeodomain-like
SMARTSM007177.2E-7864IPR001005SANT/Myb domain
PfamPF002492.3E-101061IPR001005SANT/Myb domain
CDDcd001673.45E-71162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAKNDDRQTD TWGTWEELLL ACAVNRHGTN RWDSVAMEIQ TRSSTLHPLT AQNCKQKYHD  60
LKRRFMAKDD KTDDGEDGSE PDDKKGEIPW LEELRKLRVA ELRREVQRYD VSIVSLQLKV  120
KRLKEERERS LREKESSVAK SDLEKDSEQD RAKEEKGEVD EQPEKSSPEN AAGARVSGEE  180
SDRENQSFNE SNSTDPKAEI RDNGVGETEK KREPVETVTG GPDPVSGESK PVGEGSYNGS  240
SDTVAKESAA APPIGKSLGA VKATVDGDSL ELWESVAESK GGGEEGMKES SDVQSSASLS  300
SKKNRKKTIS GSSSGEEPGT EEISPAIKRI SVKSQPLVAI LEIIRSHKHG SMFERRLDSQ  360
KNENNIESFL VE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265891.10.0PREDICTED: uncharacterized protein LOC104603529
TrEMBLA5AP961e-123A5AP96_VITVI; Putative uncharacterized protein
STRINGVIT_13s0156g00340.t011e-122(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.17e-41DNA-binding bromodomain-containing protein